Cold Enzymology Offers Insight into the Molecular Evolution of Quaternary Structure — ASN Events

Cold Enzymology Offers Insight into the Molecular Evolution of Quaternary Structure (#329)

Jacinta M Wubben 1 2 , Con Dogovski 1 , Matthew Downton 3 , Jason J Paxman 4 , Rachel Codd 5 , John Wagner 3 , Michael W Parker 6 , Matthew A Perugini 1 2
  1. Biochemistry, La Trobe Institute for Molecular Science, Bundoora, VIC, Australia
  2. Biochemistry and Molecular Biology, The University of Melbourne, Parkville, VIC, Australia
  3. IBM Research Collaboratory for Life Sciences, Carlton, VIC, Australia
  4. Australian Synchrotron, Clayton, VIC, Australia
  5. School of Medical Sciences (Pharmacology), The University of Sydney, Camperdown, NSW, Australia
  6. St. Vincent's Institute for Medical Research, Fitzroy, VIC, Australia

Dihydrodipicolinate synthase (DHDPS) from most thermophilic and mesophilic bacteria form a homo-tetramer that can be described as a dimer of tight dimers. Mutational studies at the tetramerisation interface show that this dimer-of-dimers structure is important for attenuating the conformational dynamics of the tight dimer interface, where the active sites are located. This suggests that a synergistic link between quaternary structure, protein dynamics and catalytic function exists for this model oligomeric enzyme. We therefore hypothesise that DHDPS from a cold bacterium will adopt the minimal quaternary form required for function (i.e. a dimer) given that protein dynamics are attenuated at cold temperatures.

Biophysical and kinetic studies have been performed on recombinant DHDPS from the psychrophilic bacterium Shewanella benthica (Sb-DHDPS). The enzyme crystallises as a dimer, with the number of contacts present at the interface similar to the homo-tetrameric forms found in other organisms. Sb-DHDPS also exists as an active dimer in solution at biologically-relevant temperatures (4-12°C). This psychrophilic dimer has a dissociation constant that is 20-fold weaker than any previously determined dimer dissociation constant for a DHDPS enzyme. However, the protein aggregates and possesses significantly attenuated enzymatic activity at temperatures greater than 20°C, which was not observed in the mesophilic and thermophilic enzymes. Our studies therefore offer insight into the molecular evolution of DHDPS quaternary structure, stability and dynamics that may represent a paradigm for oligomeric enzymes in general.