Structural analysis of the plant defensin NaD1's lipid binding function. (#350)
NaD1, a plant defensin derived from the ornamental tobacco Nicotiana alata,
has shown to kill the lymphoma cell line U937. In the same study
the NaD1 target was suggested to be phosphoinositides. While
Phosphoinositol-4,5-bisphosphate (PIP2) makes up less than 1% of the
cellular membrane, it was used in complex with NaD1 to
form crystals as it bound more readily. The structure was then resolved
to 1.6 Å and the binding pocket determined. Interestingly the complex
has a 1:1 ratio of protein to lipid but there existed numerous hydrogen
bonds which crossed between more than one protein
from each lipid. In vitro this complex formed large structures often hundreds of micrometers in length. The mechanisms
for which NaD1 and other similar defensins form these complexes are suggested to be the cause of their killing ability.